Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.22■□□□□ 0.19
Lsm1Q8VC85 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Lsm1Q8VC85 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Lsm1Q8VC85 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Lsm1Q8VC85 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.21■□□□□ 0.18
Lsm1Q8VC85 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Lsm1Q8VC85 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.19■□□□□ 0.18
Lsm1Q8VC85 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Gm9731-201ENSMUST00000209480 747 ntBASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lsm1Q8VC85 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Gm27000-201ENSMUST00000182943 842 ntBASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC16.17■□□□□ 0.18
Lsm1Q8VC85 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms