Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trim35Q8C006 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim35Q8C006 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim35Q8C006 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trim35Q8C006 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Gm38285-201ENSMUST00000192928 922 ntBASIC17.53■□□□□ 0.4
Trim35Q8C006 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Olfr1447-201ENSMUST00000071484 1113 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trim35Q8C006 Olfr1446-201ENSMUST00000081236 1044 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trim35Q8C006 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
Trim35Q8C006 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim35Q8C006 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim35Q8C006 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.52■□□□□ 0.4
Trim35Q8C006 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim35Q8C006 Gm44683-201ENSMUST00000209088 484 ntBASIC17.52■□□□□ 0.4
Trim35Q8C006 Sult3a1-202ENSMUST00000218204 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Sult3a1-201ENSMUST00000092597 1047 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Trim35Q8C006 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.52■□□□□ 0.4
Trim35Q8C006 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim35Q8C006 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim35Q8C006 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim35Q8C006 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trim35Q8C006 Gm12656-201ENSMUST00000118149 577 ntBASIC17.51■□□□□ 0.39
Trim35Q8C006 2310040G07Rik-202ENSMUST00000145897 462 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim35Q8C006 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.51■□□□□ 0.39
Trim35Q8C006 Gm36982-201ENSMUST00000193796 1128 ntBASIC17.51■□□□□ 0.39
Trim35Q8C006 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.51■□□□□ 0.39
Trim35Q8C006 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trim35Q8C006 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim35Q8C006 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trim35Q8C006 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim35Q8C006 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trim35Q8C006 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim35Q8C006 Gm15640-201ENSMUST00000152070 527 ntTSL 2 BASIC17.5■□□□□ 0.39
Trim35Q8C006 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim35Q8C006 Gm10698-201ENSMUST00000182663 604 ntBASIC17.5■□□□□ 0.39
Trim35Q8C006 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 AC152414.2-201ENSMUST00000219620 537 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Gm38157-201ENSMUST00000194178 1698 ntBASIC17.5■□□□□ 0.39
Trim35Q8C006 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trim35Q8C006 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim35Q8C006 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Trim35Q8C006 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim35Q8C006 Gm15378-201ENSMUST00000121894 207 ntBASIC17.49■□□□□ 0.39
Trim35Q8C006 Gm3159-203ENSMUST00000177764 618 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trim35Q8C006 Gm3269-202ENSMUST00000178137 618 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trim35Q8C006 Gm3594-203ENSMUST00000179747 618 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trim35Q8C006 Ms4a5-202ENSMUST00000186937 816 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC17.49■□□□□ 0.39
Trim35Q8C006 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 Gm904-201ENSMUST00000099519 649 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim35Q8C006 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms