Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC23.89■■□□□ 1.41
Usp47Q8BY87 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Usp47Q8BY87 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Usp47Q8BY87 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Usp47Q8BY87 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Usp47Q8BY87 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Usp47Q8BY87 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp47Q8BY87 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp47Q8BY87 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp47Q8BY87 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp47Q8BY87 Gm29707-201ENSMUST00000196325 491 ntBASIC23.87■■□□□ 1.41
Usp47Q8BY87 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
Usp47Q8BY87 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Usp47Q8BY87 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Usp47Q8BY87 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC23.85■■□□□ 1.41
Usp47Q8BY87 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Usp47Q8BY87 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Usp47Q8BY87 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Gm5898-201ENSMUST00000121016 2071 ntBASIC23.83■■□□□ 1.41
Usp47Q8BY87 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Gm15794-201ENSMUST00000120182 631 ntBASIC23.83■■□□□ 1.41
Usp47Q8BY87 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Usp47Q8BY87 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Usp47Q8BY87 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Usp47Q8BY87 Gm11841-201ENSMUST00000117060 1963 ntBASIC23.83■■□□□ 1.4
Usp47Q8BY87 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp47Q8BY87 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
Usp47Q8BY87 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Usp47Q8BY87 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp47Q8BY87 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Usp47Q8BY87 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Usp47Q8BY87 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Usp47Q8BY87 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC23.81■■□□□ 1.4
Usp47Q8BY87 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Gm27357-201ENSMUST00000183754 135 ntBASIC23.8■■□□□ 1.4
Usp47Q8BY87 Gm27742-201ENSMUST00000184667 60 ntBASIC23.8■■□□□ 1.4
Usp47Q8BY87 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Usp47Q8BY87 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Usp47Q8BY87 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp47Q8BY87 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
Usp47Q8BY87 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Usp47Q8BY87 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Usp47Q8BY87 Gm45328-201ENSMUST00000210942 917 ntBASIC23.79■■□□□ 1.4
Usp47Q8BY87 AC125350.1-201ENSMUST00000225115 903 ntBASIC23.79■■□□□ 1.4
Usp47Q8BY87 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms