Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CtcfQ61164 Gm37292-201ENSMUST00000192062 758 ntBASIC18.63■□□□□ 0.57
CtcfQ61164 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CtcfQ61164 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CtcfQ61164 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Gm13158-201ENSMUST00000122007 736 ntBASIC18.62■□□□□ 0.57
CtcfQ61164 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CtcfQ61164 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.62■□□□□ 0.57
CtcfQ61164 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.62■□□□□ 0.57
CtcfQ61164 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CtcfQ61164 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.62■□□□□ 0.57
CtcfQ61164 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.62■□□□□ 0.57
CtcfQ61164 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CtcfQ61164 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CtcfQ61164 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CtcfQ61164 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.61■□□□□ 0.57
CtcfQ61164 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.61■□□□□ 0.57
CtcfQ61164 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CtcfQ61164 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Gm37856-201ENSMUST00000191634 999 ntBASIC18.61■□□□□ 0.57
CtcfQ61164 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.61■□□□□ 0.57
CtcfQ61164 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CtcfQ61164 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CtcfQ61164 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.6■□□□□ 0.57
CtcfQ61164 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
CtcfQ61164 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CtcfQ61164 Gm11643-201ENSMUST00000119578 864 ntBASIC18.6■□□□□ 0.57
CtcfQ61164 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.6■□□□□ 0.57
CtcfQ61164 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Haglr-201ENSMUST00000100000 2085 ntBASIC18.6■□□□□ 0.57
CtcfQ61164 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CtcfQ61164 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CtcfQ61164 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
CtcfQ61164 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.59■□□□□ 0.57
CtcfQ61164 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CtcfQ61164 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CtcfQ61164 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CtcfQ61164 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CtcfQ61164 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.58■□□□□ 0.57
CtcfQ61164 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CtcfQ61164 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CtcfQ61164 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CtcfQ61164 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CtcfQ61164 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CtcfQ61164 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms