Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Limch1Q3UH68 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Limch1Q3UH68 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Limch1Q3UH68 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.9■□□□□ 0.78
Limch1Q3UH68 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Limch1Q3UH68 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Limch1Q3UH68 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.89■□□□□ 0.77
Limch1Q3UH68 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC19.89■□□□□ 0.77
Limch1Q3UH68 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Limch1Q3UH68 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Limch1Q3UH68 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.88■□□□□ 0.77
Limch1Q3UH68 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Gm7367-201ENSMUST00000057611 492 ntBASIC19.88■□□□□ 0.77
Limch1Q3UH68 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Limch1Q3UH68 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.88■□□□□ 0.77
Limch1Q3UH68 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Gm27463-201ENSMUST00000183569 57 ntBASIC19.87■□□□□ 0.77
Limch1Q3UH68 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.87■□□□□ 0.77
Limch1Q3UH68 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Limch1Q3UH68 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Gm12085-201ENSMUST00000119263 940 ntBASIC19.86■□□□□ 0.77
Limch1Q3UH68 Gm37025-201ENSMUST00000195159 829 ntBASIC19.86■□□□□ 0.77
Limch1Q3UH68 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Limch1Q3UH68 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Gm17661-201ENSMUST00000170317 270 ntBASIC19.85■□□□□ 0.77
Limch1Q3UH68 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
Limch1Q3UH68 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Limch1Q3UH68 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Gm45058-201ENSMUST00000205810 766 ntBASIC19.84■□□□□ 0.77
Limch1Q3UH68 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms