Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col28a1Q2UY11 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col28a1Q2UY11 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Gm13401-201ENSMUST00000117074 291 ntBASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Mir2861-201ENSMUST00000175539 82 ntBASIC16.4■□□□□ 0.22
Col28a1Q2UY11 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Zfp783-201ENSMUST00000095946 670 ntBASIC16.4■□□□□ 0.22
Col28a1Q2UY11 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col28a1Q2UY11 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Gm2399-201ENSMUST00000104944 225 ntBASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Gm36858-201ENSMUST00000194501 2391 ntBASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col28a1Q2UY11 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Dio3-201ENSMUST00000097228 1449 ntBASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col28a1Q2UY11 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms