Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC9.03□□□□□ -0.96
Ush2AQ2QI47 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC9.02□□□□□ -0.96
Ush2AQ2QI47 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC9.02□□□□□ -0.96
Ush2AQ2QI47 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC9.02□□□□□ -0.96
Ush2AQ2QI47 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC9.02□□□□□ -0.96
Ush2AQ2QI47 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.96
Ush2AQ2QI47 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC9.02□□□□□ -0.96
Ush2AQ2QI47 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Gm27300-201ENSMUST00000184085 97 ntBASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Gm27335-201ENSMUST00000184758 97 ntBASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Ush2AQ2QI47 Mir6990-201ENSMUST00000183724 91 ntBASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Wdyhv1-203ENSMUST00000226889 394 ntBASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Gm13597-201ENSMUST00000121239 375 ntBASIC9.01□□□□□ -0.97
Ush2AQ2QI47 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Gm27306-201ENSMUST00000183970 107 ntBASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Gm8602-201ENSMUST00000184045 607 ntBASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Ush2AQ2QI47 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Gm27646-201ENSMUST00000183989 110 ntBASIC9□□□□□ -0.97
Ush2AQ2QI47 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC9□□□□□ -0.97
Ush2AQ2QI47 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
Ush2AQ2QI47 Gm27618-201ENSMUST00000183671 60 ntBASIC9□□□□□ -0.97
Ush2AQ2QI47 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC9□□□□□ -0.97
Ush2AQ2QI47 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Ush2AQ2QI47 Gm7856-201ENSMUST00000117514 1493 ntBASIC9□□□□□ -0.97
Ush2AQ2QI47 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC9□□□□□ -0.97
Ush2AQ2QI47 Gm38308-201ENSMUST00000194934 1809 ntBASIC9□□□□□ -0.97
Ush2AQ2QI47 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC9□□□□□ -0.97
Ush2AQ2QI47 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC9□□□□□ -0.97
Ush2AQ2QI47 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC9□□□□□ -0.97
Ush2AQ2QI47 Gm44430-201ENSMUST00000203376 995 ntBASIC9□□□□□ -0.97
Ush2AQ2QI47 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms