Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nkx3-1P97436 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Nkx3-1P97436 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.61□□□□□ -0.07
Nkx3-1P97436 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nkx3-1P97436 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Olfr129-201ENSMUST00000122318 993 ntBASIC14.6□□□□□ -0.07
Nkx3-1P97436 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC14.6□□□□□ -0.07
Nkx3-1P97436 AC133598.3-202ENSMUST00000224219 531 ntBASIC14.6□□□□□ -0.07
Nkx3-1P97436 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nkx3-1P97436 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Nkx3-1P97436 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Nkx3-1P97436 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Nkx3-1P97436 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Nkx3-1P97436 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Gm24589-201ENSMUST00000116692 94 ntBASIC14.58□□□□□ -0.08
Nkx3-1P97436 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Gm18115-201ENSMUST00000221209 621 ntBASIC14.58□□□□□ -0.08
Nkx3-1P97436 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Spr-ps1-201ENSMUST00000089584 605 ntBASIC14.58□□□□□ -0.08
Nkx3-1P97436 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nkx3-1P97436 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Gm11336-201ENSMUST00000118168 334 ntBASIC14.57□□□□□ -0.08
Nkx3-1P97436 Gm27000-201ENSMUST00000182943 842 ntBASIC14.57□□□□□ -0.08
Nkx3-1P97436 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nkx3-1P97436 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms