Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC19.16■□□□□ 0.66
Col2a1P28481 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col2a1P28481 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col2a1P28481 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.16■□□□□ 0.66
Col2a1P28481 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.16■□□□□ 0.66
Col2a1P28481 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col2a1P28481 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC19.16■□□□□ 0.66
Col2a1P28481 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC19.16■□□□□ 0.66
Col2a1P28481 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.16■□□□□ 0.66
Col2a1P28481 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.15■□□□□ 0.66
Col2a1P28481 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Col2a1P28481 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC19.15■□□□□ 0.66
Col2a1P28481 AC108846.1-201ENSMUST00000214531 513 ntBASIC19.15■□□□□ 0.66
Col2a1P28481 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col2a1P28481 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col2a1P28481 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col2a1P28481 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col2a1P28481 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col2a1P28481 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.14■□□□□ 0.65
Col2a1P28481 Gm43347-201ENSMUST00000200226 580 ntBASIC19.14■□□□□ 0.65
Col2a1P28481 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col2a1P28481 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col2a1P28481 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col2a1P28481 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Col2a1P28481 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
Col2a1P28481 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Gm15165-201ENSMUST00000118140 502 ntBASIC19.13■□□□□ 0.65
Col2a1P28481 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Mir8098-201ENSMUST00000184011 137 ntBASIC19.13■□□□□ 0.65
Col2a1P28481 Gm36967-201ENSMUST00000193814 266 ntBASIC19.13■□□□□ 0.65
Col2a1P28481 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC19.13■□□□□ 0.65
Col2a1P28481 AC159301.1-201ENSMUST00000225130 1182 ntBASIC19.13■□□□□ 0.65
Col2a1P28481 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col2a1P28481 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Gm13884-201ENSMUST00000118103 829 ntBASIC19.12■□□□□ 0.65
Col2a1P28481 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.12■□□□□ 0.65
Col2a1P28481 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col2a1P28481 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.12■□□□□ 0.65
Col2a1P28481 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Col2a1P28481 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col2a1P28481 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.11■□□□□ 0.65
Col2a1P28481 Gm12644-201ENSMUST00000119935 606 ntBASIC19.11■□□□□ 0.65
Col2a1P28481 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC19.11■□□□□ 0.65
Col2a1P28481 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Gm44454-201ENSMUST00000198541 138 ntBASIC19.11■□□□□ 0.65
Col2a1P28481 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.11■□□□□ 0.65
Col2a1P28481 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
Col2a1P28481 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col2a1P28481 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col2a1P28481 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col2a1P28481 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.1■□□□□ 0.65
Col2a1P28481 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC19.1■□□□□ 0.65
Col2a1P28481 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.1■□□□□ 0.65
Col2a1P28481 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.1■□□□□ 0.65
Col2a1P28481 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms