Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RaraP11416 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RaraP11416 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.28■□□□□ 0.52
RaraP11416 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.28■□□□□ 0.52
RaraP11416 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RaraP11416 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RaraP11416 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
RaraP11416 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RaraP11416 Gm29257-201ENSMUST00000186115 639 ntBASIC18.27■□□□□ 0.52
RaraP11416 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RaraP11416 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RaraP11416 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RaraP11416 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RaraP11416 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RaraP11416 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RaraP11416 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RaraP11416 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RaraP11416 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
RaraP11416 Gm12085-201ENSMUST00000119263 940 ntBASIC18.26■□□□□ 0.51
RaraP11416 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.26■□□□□ 0.51
RaraP11416 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.26■□□□□ 0.51
RaraP11416 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RaraP11416 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RaraP11416 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.25■□□□□ 0.51
RaraP11416 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.25■□□□□ 0.51
RaraP11416 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RaraP11416 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
RaraP11416 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
RaraP11416 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.25■□□□□ 0.51
RaraP11416 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.25■□□□□ 0.51
RaraP11416 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RaraP11416 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.24■□□□□ 0.51
RaraP11416 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.24■□□□□ 0.51
RaraP11416 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 153.5 ms