Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC15.24■□□□□ 0.03
Col5a1O88207 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col5a1O88207 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC15.23■□□□□ 0.03
Col5a1O88207 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col5a1O88207 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.23■□□□□ 0.03
Col5a1O88207 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Col5a1O88207 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.23■□□□□ 0.03
Col5a1O88207 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col5a1O88207 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col5a1O88207 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.22■□□□□ 0.03
Col5a1O88207 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col5a1O88207 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Col5a1O88207 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.22■□□□□ 0.03
Col5a1O88207 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC15.22■□□□□ 0.03
Col5a1O88207 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.22■□□□□ 0.03
Col5a1O88207 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col5a1O88207 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC15.22■□□□□ 0.03
Col5a1O88207 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC15.22■□□□□ 0.03
Col5a1O88207 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.22■□□□□ 0.03
Col5a1O88207 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Col5a1O88207 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col5a1O88207 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col5a1O88207 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC15.21■□□□□ 0.03
Col5a1O88207 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col5a1O88207 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Col5a1O88207 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col5a1O88207 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC15.21■□□□□ 0.03
Col5a1O88207 Gm10060-201ENSMUST00000212002 111 ntBASIC15.21■□□□□ 0.03
Col5a1O88207 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col5a1O88207 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col5a1O88207 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.21■□□□□ 0.02
Col5a1O88207 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.2■□□□□ 0.02
Col5a1O88207 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.2■□□□□ 0.02
Col5a1O88207 Rprl3-201ENSMUST00000157400 290 ntBASIC15.2■□□□□ 0.02
Col5a1O88207 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Gm6296-201ENSMUST00000222599 943 ntBASIC15.2■□□□□ 0.02
Col5a1O88207 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC15.2■□□□□ 0.02
Col5a1O88207 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col5a1O88207 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms