Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC005519.1-201ENST00000554490 601 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 NPIPB1P-202ENST00000588786 828 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 FAM60CP-201ENST00000591086 664 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC073111.2-201ENST00000605657 1075 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC093635.1-201ENST00000609028 555 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 U1.25-201ENST00000614085 162 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC104307.1-201ENST00000616142 196 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 U1.31-201ENST00000620022 160 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC021422.1-201ENST00000621212 473 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC074140.1-201ENST00000621617 208 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 MIR6719-201ENST00000622428 87 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AL035425.4-201ENST00000624509 1063 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 MIR188-201ENST00000385034 86 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 YWHAZP4-201ENST00000392459 708 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 MIR1178-201ENST00000408396 91 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 RNA5SP198-201ENST00000410376 127 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 SLC20A1P1-201ENST00000413906 956 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 KIF4CP-201ENST00000422742 1279 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC012497.1-201ENST00000429392 575 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TUBB4BP6-201ENST00000437576 479 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AL500527.1-201ENST00000448532 255 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 HMGB1P7-201ENST00000450921 612 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 RPL31P53-201ENST00000457065 348 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC131392.1-201ENST00000506490 633 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC108103.1-201ENST00000511286 446 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC008429.2-201ENST00000523057 864 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TRIM77BP-201ENST00000524985 1119 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 OR4A40P-201ENST00000533878 948 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 SETP17-201ENST00000534163 817 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC007068.2-201ENST00000543168 395 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 DUX4L52-201ENST00000549363 777 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC007225.2-201ENST00000562529 256 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC090651.1-201ENST00000567865 634 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC245052.7-201ENST00000601161 359 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC092474.3-201ENST00000603022 568 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC004808.2-201ENST00000627965 773 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms