Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 GUSBP9-201ENST00000510138 584 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC139697.1-201ENST00000548429 745 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 DHFRP1-201ENST00000579682 559 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 AL136228.1-201ENST00000622221 319 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 HSPD1P9-201ENST00000420325 1636 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC016745.2-201ENST00000608834 3443 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 QRSL1P1-201ENST00000400977 1540 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC092681.1-201ENST00000297369 291 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 SNORA70.6-201ENST00000383934 134 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 PEX12P1-201ENST00000400284 1048 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 RNF10P1-201ENST00000418589 369 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 TMEM183AP1-205ENST00000432739 290 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AL359265.1-201ENST00000440296 795 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AL356121.1-201ENST00000442911 156 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 LINC02210-201ENST00000444561 288 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC005077.1-201ENST00000449226 375 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 GEMIN2P1-201ENST00000454246 752 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 NACAP5-201ENST00000509863 636 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 GAPDHP71-201ENST00000511530 1003 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 OR4A43P-201ENST00000532938 908 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC42Q96M95 COX6CP7-201ENST00000597056 208 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC42Q96M95 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.15□□□□□ -1.42
CCDC42Q96M95 AC023632.6-201ENST00000624338 2177 ntBASIC6.15□□□□□ -1.43
CCDC42Q96M95 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC42Q96M95 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC42Q96M95 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 OR4F13P-202ENST00000560066 2054 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL121886.1-201ENST00000358609 435 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 MIR130A-201ENST00000385274 89 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC005042.1-201ENST00000393397 800 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL096711.1-201ENST00000404780 554 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 RN7SKP146-201ENST00000410242 334 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL133482.1-201ENST00000415988 498 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 REREP1Y-201ENST00000422655 198 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 NPM1P25-201ENST00000429734 854 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 RPSAP32-201ENST00000432681 526 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 GAPDHP59-201ENST00000435908 267 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 REREP2Y-201ENST00000439103 200 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 RPS17P5-201ENST00000498293 408 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL158068.1-201ENST00000506116 616 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC074255.1-201ENST00000511259 501 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 PRMT5P1-201ENST00000514351 598 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 SNORA70.11-201ENST00000515987 138 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 SNORA70.13-201ENST00000516116 138 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 OR4A17P-201ENST00000526032 904 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 MIR4433B-201ENST00000581329 102 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 AC004801.6-201ENST00000616571 978 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms