Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC005042.1-201ENST00000393397 800 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC7.56□□□□□ -1.2
HOXC9P31274 OR6D1P-201ENST00000436165 939 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 RPL7P45-201ENST00000455851 743 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 RN7SL172P-201ENST00000460535 303 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 RN7SL610P-201ENST00000463845 291 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 RN7SL51P-201ENST00000468230 285 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC7.56□□□□□ -1.2
HOXC9P31274 NDUFA5P12-201ENST00000503796 343 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.56□□□□□ -1.2
HOXC9P31274 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 TOMM22P4-201ENST00000511318 336 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 AC253576.1-201ENST00000511645 1156 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 CDC42P3-201ENST00000518493 633 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 AP006245.2-201ENST00000522004 300 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.56□□□□□ -1.2
HOXC9P31274 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC7.56□□□□□ -1.2
HOXC9P31274 AC126177.5-201ENST00000549599 178 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.56□□□□□ -1.2
HOXC9P31274 AC000068.2-201ENST00000608816 460 ntBASIC7.56□□□□□ -1.2
HOXC9P31274 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.56□□□□□ -1.2
HOXC9P31274 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.56□□□□□ -1.2
HOXC9P31274 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.55□□□□□ -1.2
HOXC9P31274 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
HOXC9P31274 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 RNU4-2-201ENST00000365668 141 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 AL445687.2-201ENST00000458156 728 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 RN7SL222P-201ENST00000476452 299 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 RN7SL826P-201ENST00000479724 288 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 AC023818.1-201ENST00000498379 384 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC7.55□□□□□ -1.2
HOXC9P31274 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
HOXC9P31274 OR4A46P-201ENST00000527255 933 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 AL121594.2-201ENST00000541658 472 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.55□□□□□ -1.2
HOXC9P31274 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC7.55□□□□□ -1.2
HOXC9P31274 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.55□□□□□ -1.2
HOXC9P31274 AC005229.3-201ENST00000603438 323 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 AC025574.2-201ENST00000615621 514 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 AF117829.2-201ENST00000619538 361 ntBASIC7.55□□□□□ -1.2
HOXC9P31274 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
HOXC9P31274 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HOXC9P31274 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC7.55□□□□□ -1.2
HOXC9P31274 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
HOXC9P31274 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
HOXC9P31274 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.54□□□□□ -1.2
HOXC9P31274 CR383656.5-201ENST00000547616 1340 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC7.54□□□□□ -1.2
HOXC9P31274 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
HOXC9P31274 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
HOXC9P31274 AL360271.1-201ENST00000395679 510 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AL390774.1-201ENST00000411924 246 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.54□□□□□ -1.2
HOXC9P31274 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC7.54□□□□□ -1.2
HOXC9P31274 SLC35E1P1-201ENST00000419313 864 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 CYCSP6-201ENST00000434498 302 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 LDHAP2-201ENST00000437325 985 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC245047.2-201ENST00000441060 530 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.54□□□□□ -1.2
HOXC9P31274 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.54□□□□□ -1.2
HOXC9P31274 RPS23P2-201ENST00000463671 415 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC079841.1-201ENST00000481228 950 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 RPS21P4-201ENST00000487122 248 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC072052.1-201ENST00000496556 306 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
HOXC9P31274 APPL2-203ENST00000546731 684 ntTSL 2 BASIC7.54□□□□□ -1.2
HOXC9P31274 HAUS8P1-201ENST00000549005 542 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.54□□□□□ -1.2
HOXC9P31274 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC7.54□□□□□ -1.2
HOXC9P31274 AC037198.3-201ENST00000616754 526 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
HOXC9P31274 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.54□□□□□ -1.2
HOXC9P31274 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
HOXC9P31274 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms