Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXD4P09016 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC068768.2-201ENST00000602352 343 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AL591167.1-201ENST00000607321 456 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AC010809.3-201ENST00000621310 641 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 RBMY1HP-201ENST00000382759 1389 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
HOXD4P09016 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HOXD4P09016 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC027279.1-201ENST00000568885 4284 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AC139426.3-201ENST00000605648 2059 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD4P09016 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 HCFC2P1-201ENST00000392864 1592 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC091305.2-201ENST00000624049 1576 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 OR9K1P-202ENST00000641111 3217 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.5□□□□□ -1.53
HOXD4P09016 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
HOXD4P09016 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 TMSB4XP4-201ENST00000323496 618 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC087752.1-201ENST00000391360 558 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 RN7SKP17-201ENST00000411242 351 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXD4P09016 AL035660.1-201ENST00000422041 222 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 LYPLA1P1-201ENST00000434514 622 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 AL161636.2-201ENST00000445179 927 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 CST12P-201ENST00000457644 362 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.5□□□□□ -1.53
HOXD4P09016 RN7SL273P-201ENST00000481561 299 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 DEFB109A-201ENST00000482450 265 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 RNA5SP400-201ENST00000517155 111 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC136777.2-201ENST00000522979 358 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC021269.1-201ENST00000526860 705 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC091078.2-201ENST00000557145 559 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 NPM1P45-201ENST00000583151 559 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 MIR4443-201ENST00000585052 53 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXD4P09016 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 AP001357.1-201ENST00000586304 1053 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.5□□□□□ -1.53
HOXD4P09016 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXD4P09016 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.5□□□□□ -1.53
HOXD4P09016 AL645933.2-201ENST00000606743 1207 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AL136131.3-201ENST00000607600 188 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 MIR6793-201ENST00000612376 63 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 AC126175.1-201ENST00000617041 758 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXD4P09016 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXD4P09016 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 AL359091.1-201ENST00000449048 1734 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD4P09016 MRRFP1-201ENST00000435941 1675 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 OR4G1P-202ENST00000641173 1788 ntBASIC5.5□□□□□ -1.53
HOXD4P09016 GUCY1B2-204ENST00000531898 1979 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 RARSP1-201ENST00000542842 1418 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
HOXD4P09016 AL133243.2-201ENST00000610331 1621 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
HOXD4P09016 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
HOXD4P09016 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 MIR433-201ENST00000384837 93 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 AL445238.1-204ENST00000400311 463 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 BX284632.2-201ENST00000421091 399 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 GAPDHP75-201ENST00000433910 943 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 VN1R110P-201ENST00000438988 971 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 GAPDHP23-201ENST00000444823 993 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms