Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL645936.2-201ENST00000430565 928 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 FECHP1-201ENST00000431896 1214 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 ARL4AP3-201ENST00000441452 574 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC239800.1-201ENST00000442049 719 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 CRYGGP-201ENST00000443337 145 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 OR7E7P-201ENST00000455678 1012 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 RPS16P9-201ENST00000477220 427 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 PPP1R2P6-201ENST00000478565 588 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AF305872.1-201ENST00000485217 471 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 RPL21P42-201ENST00000488408 464 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC021733.2-201ENST00000518830 497 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 CETN3-206ENST00000522864 738 ntTSL 3 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 OR4R3P-201ENST00000525084 838 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC091304.5-201ENST00000568969 158 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC107982.3-201ENST00000584957 985 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL035410.2-201ENST00000604963 864 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL450270.1-201ENST00000606160 391 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL133243.1-201ENST00000614487 366 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC140479.4-205ENST00000636339 820 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL392088.2-201ENST00000637607 285 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC099654.10-201ENST00000640395 161 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC097717.1-227ENST00000594069 1322 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC092646.2-201ENST00000431242 2095 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 MTND5P29-201ENST00000458676 1807 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 CCDC150P1-201ENST00000537123 2215 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC010329.1-201ENST00000593903 8328 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC020658.2-201ENST00000559030 4020 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC007485.2-201ENST00000623493 1667 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 Y_RNA.194-201ENST00000363985 102 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MTND4LP21-201ENST00000415303 295 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ZNF736P2Y-201ENST00000416040 1279 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 RPL5P2-201ENST00000429598 854 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 CLNS1AP1-201ENST00000435954 682 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 SUMO2P1-206ENST00000445436 284 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AP000542.1-201ENST00000448473 371 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 LRRC37A14P-201ENST00000452297 462 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MEF2AP1-201ENST00000454867 863 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 F11-205ENST00000492972 1204 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MORF4L2P1-201ENST00000503761 858 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MTCYBP23-201ENST00000558717 1102 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 WDR45BP1-201ENST00000583470 1029 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MIR5682-201ENST00000584864 76 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AL356055.1-201ENST00000602528 446 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC015849.6-201ENST00000605454 474 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC012511.1-201ENST00000608140 449 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC128687.2-201ENST00000609657 566 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AL137246.2-201ENST00000613439 662 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 VN1R7P-201ENST00000619242 903 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 MBD5-221ENST00000637159 902 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms