Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Gm6576-201ENSMUST00000169678 883 ntBASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Alkbh1-212ENSMUST00000185301 408 ntBASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
H2afb1S4R1E0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Gm13158-201ENSMUST00000122007 736 ntBASIC15.38■□□□□ 0.05
H2afb1S4R1E0 AC164629.5-201ENSMUST00000220387 632 ntBASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
H2afb1S4R1E0 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Gm11249-201ENSMUST00000117071 859 ntBASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 AC163280.1-201ENSMUST00000228194 1100 ntBASIC15.37■□□□□ 0.05
H2afb1S4R1E0 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
H2afb1S4R1E0 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
H2afb1S4R1E0 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms