Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Ushbp1Q8R370 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Ushbp1Q8R370 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Gm6345-202ENSMUST00000180900 204 ntBASIC19■□□□□ 0.63
Ushbp1Q8R370 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19■□□□□ 0.63
Ushbp1Q8R370 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC19■□□□□ 0.63
Ushbp1Q8R370 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19■□□□□ 0.63
Ushbp1Q8R370 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ushbp1Q8R370 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Gm12085-201ENSMUST00000119263 940 ntBASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ushbp1Q8R370 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Gm33142-201ENSMUST00000193913 867 ntBASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Gm18032-201ENSMUST00000222541 538 ntBASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Ushbp1Q8R370 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Gm37025-201ENSMUST00000195159 829 ntBASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Gm45058-201ENSMUST00000205810 766 ntBASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.97■□□□□ 0.63
Ushbp1Q8R370 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Gm17661-201ENSMUST00000170317 270 ntBASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ushbp1Q8R370 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms