Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Gm27867-201ENSMUST00000184778 125 ntBASIC19.19■□□□□ 0.66
Syne4Q8CII8 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Syne4Q8CII8 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Mir5131-201ENSMUST00000175426 93 ntBASIC19.18■□□□□ 0.66
Syne4Q8CII8 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC19.18■□□□□ 0.66
Syne4Q8CII8 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Syne4Q8CII8 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC19.17■□□□□ 0.66
Syne4Q8CII8 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Syne4Q8CII8 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.17■□□□□ 0.66
Syne4Q8CII8 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Syne4Q8CII8 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC19.16■□□□□ 0.66
Syne4Q8CII8 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Syne4Q8CII8 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Gm15165-201ENSMUST00000118140 502 ntBASIC19.15■□□□□ 0.66
Syne4Q8CII8 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC19.15■□□□□ 0.66
Syne4Q8CII8 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Syne4Q8CII8 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Syne4Q8CII8 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Syne4Q8CII8 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.14■□□□□ 0.65
Syne4Q8CII8 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.14■□□□□ 0.65
Syne4Q8CII8 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Syne4Q8CII8 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Syne4Q8CII8 Gm44357-201ENSMUST00000195897 142 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms