Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim47Q8C0E3 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim47Q8C0E3 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim47Q8C0E3 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim47Q8C0E3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim47Q8C0E3 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Gm11355-201ENSMUST00000121120 306 ntBASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Phf7-203ENSMUST00000226565 1971 ntBASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim47Q8C0E3 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms