Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Gm5417-201ENSMUST00000079706 384 ntBASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trub1Q8C0D0 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Gm18958-201ENSMUST00000174258 762 ntBASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.47■□□□□ 0.39
Trub1Q8C0D0 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.47■□□□□ 0.39
Trub1Q8C0D0 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Gm27463-201ENSMUST00000183569 57 ntBASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.46■□□□□ 0.39
Trub1Q8C0D0 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Trub1Q8C0D0 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trub1Q8C0D0 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Gm37055-201ENSMUST00000191866 133 ntBASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trub1Q8C0D0 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms