Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Mir8112-201ENSMUST00000184382 131 ntBASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Sh3rf1Q69ZI1 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Gm13216-201ENSMUST00000117145 591 ntBASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sh3rf1Q69ZI1 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Gm9987-201ENSMUST00000069768 567 ntBASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Zfp783-201ENSMUST00000095946 670 ntBASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sh3rf1Q69ZI1 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sh3rf1Q69ZI1 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Gm43183-201ENSMUST00000200632 547 ntBASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sh3rf1Q69ZI1 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms