Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trim27Q62158 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Trim27Q62158 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim27Q62158 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim27Q62158 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Trim27Q62158 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Trim27Q62158 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.81■□□□□ 0.92
Trim27Q62158 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim27Q62158 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.81■□□□□ 0.92
Trim27Q62158 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim27Q62158 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim27Q62158 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim27Q62158 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.8■□□□□ 0.92
Trim27Q62158 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Trim27Q62158 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Haglr-201ENSMUST00000100000 2085 ntBASIC20.79■□□□□ 0.92
Trim27Q62158 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Trim27Q62158 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.79■□□□□ 0.92
Trim27Q62158 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim27Q62158 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim27Q62158 Gm15565-201ENSMUST00000118890 427 ntBASIC20.78■□□□□ 0.92
Trim27Q62158 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Gm43799-201ENSMUST00000201845 579 ntBASIC20.78■□□□□ 0.92
Trim27Q62158 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.78■□□□□ 0.92
Trim27Q62158 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Trim27Q62158 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim27Q62158 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Trim27Q62158 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Trim27Q62158 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Trim27Q62158 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim27Q62158 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim27Q62158 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim27Q62158 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
Trim27Q62158 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Trim27Q62158 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC20.77■□□□□ 0.91
Trim27Q62158 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.76■□□□□ 0.91
Trim27Q62158 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trim27Q62158 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim27Q62158 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC20.76■□□□□ 0.91
Trim27Q62158 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.76■□□□□ 0.91
Trim27Q62158 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.76■□□□□ 0.91
Trim27Q62158 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim27Q62158 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim27Q62158 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms