Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ClppO88696 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
ClppO88696 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
ClppO88696 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC16.52■□□□□ 0.24
ClppO88696 Gm18101-201ENSMUST00000215769 548 ntBASIC16.52■□□□□ 0.24
ClppO88696 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ClppO88696 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ClppO88696 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
ClppO88696 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC16.52■□□□□ 0.24
ClppO88696 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.52■□□□□ 0.24
ClppO88696 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ClppO88696 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ClppO88696 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ClppO88696 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC16.51■□□□□ 0.23
ClppO88696 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.51■□□□□ 0.23
ClppO88696 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ClppO88696 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.51■□□□□ 0.23
ClppO88696 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.51■□□□□ 0.23
ClppO88696 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ClppO88696 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ClppO88696 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.51■□□□□ 0.23
ClppO88696 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ClppO88696 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ClppO88696 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ClppO88696 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.5■□□□□ 0.23
ClppO88696 Gm13401-201ENSMUST00000117074 291 ntBASIC16.5■□□□□ 0.23
ClppO88696 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.5■□□□□ 0.23
ClppO88696 Gm23634-201ENSMUST00000175071 91 ntBASIC16.5■□□□□ 0.23
ClppO88696 Gm37025-201ENSMUST00000195159 829 ntBASIC16.5■□□□□ 0.23
ClppO88696 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.5■□□□□ 0.23
ClppO88696 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ClppO88696 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
ClppO88696 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC16.5■□□□□ 0.23
ClppO88696 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ClppO88696 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
ClppO88696 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Gm7638-201ENSMUST00000121348 967 ntBASIC16.49■□□□□ 0.23
ClppO88696 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.49■□□□□ 0.23
ClppO88696 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.49■□□□□ 0.23
ClppO88696 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC16.49■□□□□ 0.23
ClppO88696 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ClppO88696 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ClppO88696 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
ClppO88696 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
ClppO88696 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC16.48■□□□□ 0.23
ClppO88696 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ClppO88696 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ClppO88696 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.48■□□□□ 0.23
ClppO88696 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ClppO88696 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ClppO88696 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms