Protein–RNA interactions for Protein: O88427

Cacna1h, Voltage-dependent T-type calcium channel subunit alpha-1H, mousemouse

Predictions only

Length 2,365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1hO88427 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.5■□□□□ 0.23
Cacna1hO88427 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cacna1hO88427 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cacna1hO88427 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cacna1hO88427 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cacna1hO88427 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.49■□□□□ 0.23
Cacna1hO88427 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.49■□□□□ 0.23
Cacna1hO88427 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cacna1hO88427 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cacna1hO88427 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.48■□□□□ 0.23
Cacna1hO88427 Gm11780-201ENSMUST00000136880 516 ntBASIC16.48■□□□□ 0.23
Cacna1hO88427 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
Cacna1hO88427 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.48■□□□□ 0.23
Cacna1hO88427 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.48■□□□□ 0.23
Cacna1hO88427 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Cacna1hO88427 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cacna1hO88427 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Cacna1hO88427 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1hO88427 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.47■□□□□ 0.23
Cacna1hO88427 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1hO88427 Mir6977-201ENSMUST00000184960 64 ntBASIC16.47■□□□□ 0.23
Cacna1hO88427 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1hO88427 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1hO88427 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1hO88427 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Cacna1hO88427 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.46■□□□□ 0.23
Cacna1hO88427 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
Cacna1hO88427 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
Cacna1hO88427 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.46■□□□□ 0.23
Cacna1hO88427 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cacna1hO88427 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1hO88427 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Cacna1hO88427 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cacna1hO88427 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cacna1hO88427 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Cacna1hO88427 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cacna1hO88427 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.46■□□□□ 0.22
Cacna1hO88427 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cacna1hO88427 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.45■□□□□ 0.22
Cacna1hO88427 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.45■□□□□ 0.22
Cacna1hO88427 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.45■□□□□ 0.22
Cacna1hO88427 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Cacna1hO88427 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1hO88427 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cacna1hO88427 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.44■□□□□ 0.22
Cacna1hO88427 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1hO88427 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms