Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-1102P-201ENST00000516149 96 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 RNU4-18P-201ENST00000516751 149 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 SNORA81.2-201ENST00000516868 170 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL953862.2-201ENST00000603089 820 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AP000403.1-201ENST00000603349 851 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC024085.1-201ENST00000604299 432 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL359314.1-201ENST00000616913 261 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC025287.2-201ENST00000621911 668 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AP003499.2-201ENST00000624100 483 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC092701.1-201ENST00000623627 1551 ntBASIC7.71□□□□□ -1.17
CCDC39Q9UFE4 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.71□□□□□ -1.17
CCDC39Q9UFE4 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
CCDC39Q9UFE4 AL451064.2-201ENST00000623514 1654 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 FAM32BP-201ENST00000344033 333 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 PDCL3P5-201ENST00000398028 722 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL133264.1-201ENST00000407157 562 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC006366.1-201ENST00000422002 759 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC007568.1-201ENST00000422912 471 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 FDPSP6-201ENST00000425091 512 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC245884.2-201ENST00000426257 404 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 RPL34P27-201ENST00000428810 349 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL365396.1-201ENST00000430854 671 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC006994.1-201ENST00000438212 839 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL355355.1-201ENST00000442900 793 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 OR52J1P-201ENST00000450596 932 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 NDUFAF4P4-201ENST00000454883 502 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC079193.1-201ENST00000460497 588 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 RPS7P7-201ENST00000463499 571 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 RN7SL149P-201ENST00000465197 281 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 CBX5P1-201ENST00000468470 561 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 RN7SL187P-201ENST00000495587 303 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC069306.1-201ENST00000507006 843 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC010468.3-201ENST00000508225 458 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC116353.3-201ENST00000511215 249 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 FAM30C-201ENST00000561158 410 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC095057.3-201ENST00000567102 1157 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 SNORA59B-202ENST00000578183 701 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL031429.2-201ENST00000602605 649 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC025449.1-201ENST00000603896 529 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC010738.1-201ENST00000604970 987 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC092944.2-201ENST00000605443 889 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC015804.1-201ENST00000622935 435 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AC007347.2-201ENST00000623044 180 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 AL356266.1-201ENST00000623311 483 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 FRG1EP-201ENST00000634469 770 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 DLEU2L-201ENST00000371086 3555 ntBASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC7.71□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms