Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC068870.3-201ENST00000625077 2536 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 TCP1P3-201ENST00000414406 1498 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AL157702.1-201ENST00000398764 426 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 GPS2P1-201ENST00000411761 986 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 OR3D1P-201ENST00000438288 955 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AL603882.1-201ENST00000463059 681 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 RN7SL104P-201ENST00000498686 293 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 NREP-217ENST00000509025 987 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 NREP-223ENST00000515855 801 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 RNA5SP206-201ENST00000516703 121 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 CSAG2-201ENST00000535353 237 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC089984.3-201ENST00000552838 363 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 MIR378H-201ENST00000579966 83 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC008507.3-201ENST00000585753 472 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 COX6CP7-201ENST00000597056 208 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AL513327.3-201ENST00000602618 469 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 uc_338.26-201ENST00000612659 160 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 AC027506.1-201ENST00000621395 198 ntBASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC28BQ9BUN5 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AL137141.1-201ENST00000624622 4836 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 OR10R3P-201ENST00000361688 942 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 RNA5SP211-201ENST00000365516 117 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC087752.1-201ENST00000391360 558 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 MRPL32P1-201ENST00000406301 247 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 RN7SKP205-201ENST00000410999 307 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 GPN3P1-201ENST00000423883 535 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AP003385.1-201ENST00000426387 893 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC096775.1-201ENST00000437724 448 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC009244.1-201ENST00000450566 258 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 RN7SL83P-201ENST00000468131 297 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 RPL5P33-201ENST00000487833 905 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC009567.2-201ENST00000502989 349 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC008868.1-201ENST00000509786 737 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 NATP-201ENST00000523491 878 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 OR7E158P-201ENST00000524483 910 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 OR56A7P-201ENST00000524865 941 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 CYCSP25-201ENST00000525280 316 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 OR9G2P-201ENST00000533326 880 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC068993.1-201ENST00000546724 589 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 BMS1P16-201ENST00000556075 1147 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms