Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 RN7SKP15-201ENST00000364742 309 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AL096800.1-201ENST00000405326 893 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 VN1R3-201ENST00000418822 919 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC093166.4-201ENST00000457867 318 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AL157777.1-201ENST00000468100 304 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 RPL12P24-201ENST00000474907 486 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 OR4A42P-201ENST00000531397 938 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC092121.1-201ENST00000569452 202 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 GARSP1-201ENST00000570895 719 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC027243.2-201ENST00000602530 724 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC018659.2-201ENST00000624690 715 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 BRAFP1-201ENST00000445336 2703 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 PARP4P2-201ENST00000446672 3326 ntBASIC5.99□□□□□ -1.45
LHX3Q9UBR4 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LHX3Q9UBR4 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC091305.2-201ENST00000624049 1576 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC079807.1-201ENST00000429993 481 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ACA64.1-201ENST00000459171 127 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AL603882.1-201ENST00000463059 681 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 PFN1P6-201ENST00000476786 399 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 RN7SL57P-201ENST00000493687 290 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 RNA5SP271-201ENST00000516700 88 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AP000648.1-201ENST00000529682 397 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC091078.2-201ENST00000557145 559 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ADAM3B-201ENST00000569937 840 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AL161912.3-201ENST00000605404 628 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AL031601.1-201ENST00000605702 394 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC145423.1-201ENST00000605712 336 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 MIR6861-201ENST00000618657 64 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 AC068769.1-201ENST00000474767 2426 ntBASIC5.98□□□□□ -1.45
LHX3Q9UBR4 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LHX3Q9UBR4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC123912.3-201ENST00000600907 1367 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms