Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.94□□□□□ -1.46
SHOX2O60902 COX6B1P2-201ENST00000489624 230 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 AC023424.1-201ENST00000496058 459 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC5.94□□□□□ -1.46
SHOX2O60902 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.94□□□□□ -1.46
SHOX2O60902 AC093878.1-201ENST00000515630 432 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.94□□□□□ -1.46
SHOX2O60902 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.94□□□□□ -1.46
SHOX2O60902 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC5.94□□□□□ -1.46
SHOX2O60902 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 AL353807.4-201ENST00000604995 257 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 AC026367.3-201ENST00000619032 590 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 AC103564.3-201ENST00000621194 220 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 MFSD8-239ENST00000641590 2479 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SHOX2O60902 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHOX2O60902 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SHOX2O60902 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHOX2O60902 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.94□□□□□ -1.46
SHOX2O60902 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.94□□□□□ -1.46
SHOX2O60902 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHOX2O60902 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SHOX2O60902 HSPD1P1-201ENST00000503199 1726 ntBASIC5.94□□□□□ -1.46
SHOX2O60902 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 AC010132.4-201ENST00000569883 1368 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.93□□□□□ -1.46
SHOX2O60902 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 AC107977.1-201ENST00000355745 939 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 RNA5SP211-201ENST00000365516 117 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 RGS5-202ENST00000367903 934 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 RPLP1P10-201ENST00000413972 339 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 AL161742.1-201ENST00000418154 584 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 RPL6P21-201ENST00000418672 846 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.93□□□□□ -1.46
SHOX2O60902 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 CHCHD4P5-201ENST00000436684 427 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 AL121578.2-201ENST00000448797 447 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 OR52I1-201ENST00000450052 1050 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 RBMY2EP-202ENST00000456360 940 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 SNORD125-201ENST00000459538 96 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.93□□□□□ -1.46
SHOX2O60902 RPS17P5-201ENST00000498293 408 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 AC008868.1-201ENST00000509786 737 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 AC096661.1-201ENST00000515870 822 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 TMEM97P2-201ENST00000517841 403 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC5.93□□□□□ -1.46
SHOX2O60902 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.93□□□□□ -1.46
SHOX2O60902 AC093524.1-201ENST00000564266 1094 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.93□□□□□ -1.46
SHOX2O60902 AC020763.5-201ENST00000623298 430 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.93□□□□□ -1.46
SHOX2O60902 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.93□□□□□ -1.46
SHOX2O60902 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHOX2O60902 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.92□□□□□ -1.46
SHOX2O60902 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHOX2O60902 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
SHOX2O60902 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHOX2O60902 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHOX2O60902 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHOX2O60902 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC5.92□□□□□ -1.46
SHOX2O60902 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.92□□□□□ -1.46
SHOX2O60902 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.92□□□□□ -1.46
SHOX2O60902 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHOX2O60902 OR7A2P-201ENST00000304105 930 ntBASIC5.92□□□□□ -1.46
SHOX2O60902 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms