Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC6.44□□□□□ -1.38
PTPN9P43378 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
PTPN9P43378 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.44□□□□□ -1.38
PTPN9P43378 OR4A41P-201ENST00000533053 928 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.44□□□□□ -1.38
PTPN9P43378 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 AC121758.1-202ENST00000556917 658 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.44□□□□□ -1.38
PTPN9P43378 AL049874.4-201ENST00000557593 255 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 AL078601.3-201ENST00000573303 535 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 AC138207.8-204ENST00000579588 527 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC6.44□□□□□ -1.38
PTPN9P43378 MIR4701-201ENST00000583094 63 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.44□□□□□ -1.38
PTPN9P43378 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.43□□□□□ -1.38
PTPN9P43378 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
PTPN9P43378 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
PTPN9P43378 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.43□□□□□ -1.38
PTPN9P43378 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 RNA5SP514-201ENST00000363717 111 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 RNU6-316P-201ENST00000391027 107 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AL035422.1-201ENST00000414193 397 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AC015977.1-201ENST00000418887 292 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.43□□□□□ -1.38
PTPN9P43378 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.43□□□□□ -1.38
PTPN9P43378 TRIM60P13-201ENST00000432350 1283 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AC013410.1-201ENST00000436223 1232 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.43□□□□□ -1.38
PTPN9P43378 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 AC005017.1-201ENST00000482002 490 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.43□□□□□ -1.38
PTPN9P43378 RPL12P30-201ENST00000488389 499 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 HMGN1P17-201ENST00000513734 295 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 NPIPB14P-203ENST00000532298 987 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC6.43□□□□□ -1.38
PTPN9P43378 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC6.43□□□□□ -1.38
PTPN9P43378 AC141002.1-201ENST00000607025 279 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AL162377.2-201ENST00000624532 337 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AC018717.1-201ENST00000457712 1505 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 EIF3EP1-201ENST00000433978 1316 ntBASIC6.43□□□□□ -1.38
PTPN9P43378 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
PTPN9P43378 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.43□□□□□ -1.38
PTPN9P43378 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.43□□□□□ -1.38
PTPN9P43378 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.43□□□□□ -1.38
PTPN9P43378 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.43□□□□□ -1.38
PTPN9P43378 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
PTPN9P43378 AC007159.1-201ENST00000566529 4706 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 HSPD1P8-201ENST00000400121 1658 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
PTPN9P43378 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.42□□□□□ -1.38
PTPN9P43378 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
PTPN9P43378 AP000432.2-201ENST00000624164 2048 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.42□□□□□ -1.38
PTPN9P43378 YWHAZP6-201ENST00000399764 738 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC019070.1-201ENST00000415008 1024 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.42□□□□□ -1.38
PTPN9P43378 AC092865.3-201ENST00000425390 1026 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC016027.5-201ENST00000427227 210 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
PTPN9P43378 AK3P5-201ENST00000432033 519 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AL512593.1-201ENST00000444758 779 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.42□□□□□ -1.38
PTPN9P43378 RPL23AP60-201ENST00000450011 454 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.42□□□□□ -1.38
PTPN9P43378 TPRKBP1-201ENST00000456243 481 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 MTCYBP14-201ENST00000457471 715 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AL035690.1-201ENST00000490892 383 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 OR51A1P-201ENST00000511110 946 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC008429.4-201ENST00000521201 182 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.42□□□□□ -1.38
PTPN9P43378 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC6.42□□□□□ -1.38
PTPN9P43378 AC130364.2-201ENST00000528639 604 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.42□□□□□ -1.38
PTPN9P43378 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC6.42□□□□□ -1.38
PTPN9P43378 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC6.42□□□□□ -1.38
PTPN9P43378 RNU4ATAC-201ENST00000580972 127 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.42□□□□□ -1.38
PTPN9P43378 SMIM12P1-201ENST00000603004 274 ntBASIC6.42□□□□□ -1.38
PTPN9P43378 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.42□□□□□ -1.38
PTPN9P43378 AC073592.7-201ENST00000623659 507 ntBASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms