Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.81■□□□□ 0.28
Lima1Q9ERG0 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lima1Q9ERG0 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lima1Q9ERG0 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Gm12896-201ENSMUST00000118430 226 ntBASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Gm12441-201ENSMUST00000121806 588 ntBASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lima1Q9ERG0 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms