Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim60Q8VI40 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim60Q8VI40 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim60Q8VI40 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim60Q8VI40 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim60Q8VI40 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim60Q8VI40 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim60Q8VI40 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Gm18666-201ENSMUST00000190039 958 ntBASIC17.59■□□□□ 0.41
Trim60Q8VI40 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim60Q8VI40 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim60Q8VI40 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
Trim60Q8VI40 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.58■□□□□ 0.41
Trim60Q8VI40 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim60Q8VI40 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim60Q8VI40 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim60Q8VI40 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Trim60Q8VI40 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim60Q8VI40 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim60Q8VI40 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim60Q8VI40 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim60Q8VI40 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim60Q8VI40 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms