Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Gm7291-201ENSMUST00000199147 382 ntBASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Ccdc28bQ8CEG5 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28bQ8CEG5 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Gm6365-201ENSMUST00000054711 744 ntBASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Flg-201ENSMUST00000050758 1488 ntBASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ccdc28bQ8CEG5 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Gm44549-201ENSMUST00000208351 577 ntBASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ccdc28bQ8CEG5 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms