Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Rnf220Q6PDX6 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf220Q6PDX6 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Gm13234-201ENSMUST00000120010 747 ntBASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf220Q6PDX6 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
Rnf220Q6PDX6 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Gm10129-202ENSMUST00000193100 1316 ntBASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rnf220Q6PDX6 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rnf220Q6PDX6 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rnf220Q6PDX6 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms