Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col12a1Q60847 Gm14701-201ENSMUST00000117156 348 ntBASIC16.81■□□□□ 0.28
Col12a1Q60847 Gm13418-201ENSMUST00000119097 944 ntBASIC16.81■□□□□ 0.28
Col12a1Q60847 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col12a1Q60847 Mir3113-201ENSMUST00000175478 76 ntBASIC16.81■□□□□ 0.28
Col12a1Q60847 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Col12a1Q60847 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col12a1Q60847 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Gm13036-201ENSMUST00000117799 748 ntBASIC16.8■□□□□ 0.28
Col12a1Q60847 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.8■□□□□ 0.28
Col12a1Q60847 Mir6956-201ENSMUST00000183598 62 ntBASIC16.8■□□□□ 0.28
Col12a1Q60847 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.8■□□□□ 0.28
Col12a1Q60847 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Col12a1Q60847 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Grk6-207ENSMUST00000225925 2769 ntBASIC16.8■□□□□ 0.28
Col12a1Q60847 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Gm13312-201ENSMUST00000119631 718 ntBASIC16.8■□□□□ 0.28
Col12a1Q60847 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Col12a1Q60847 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col12a1Q60847 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Gm13186-201ENSMUST00000118031 316 ntBASIC16.79■□□□□ 0.28
Col12a1Q60847 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.79■□□□□ 0.28
Col12a1Q60847 Gm6089-201ENSMUST00000197666 938 ntBASIC16.79■□□□□ 0.28
Col12a1Q60847 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.79■□□□□ 0.28
Col12a1Q60847 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.79■□□□□ 0.28
Col12a1Q60847 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Col12a1Q60847 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Col12a1Q60847 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col12a1Q60847 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Col12a1Q60847 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.78■□□□□ 0.28
Col12a1Q60847 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Col12a1Q60847 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col12a1Q60847 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Col12a1Q60847 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC16.78■□□□□ 0.28
Col12a1Q60847 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.78■□□□□ 0.28
Col12a1Q60847 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 Gm44450-201ENSMUST00000199528 114 ntBASIC16.77■□□□□ 0.28
Col12a1Q60847 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC16.77■□□□□ 0.28
Col12a1Q60847 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col12a1Q60847 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Col12a1Q60847 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col12a1Q60847 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col12a1Q60847 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col12a1Q60847 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col12a1Q60847 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col12a1Q60847 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.76■□□□□ 0.27
Col12a1Q60847 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col12a1Q60847 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms