Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps54Q5SPW0 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps54Q5SPW0 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Vps54Q5SPW0 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.39■□□□□ 0.86
Vps54Q5SPW0 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps54Q5SPW0 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Gm23634-201ENSMUST00000175071 91 ntBASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps54Q5SPW0 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Gm26039-201ENSMUST00000158152 144 ntBASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Vps54Q5SPW0 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Gm27389-201ENSMUST00000183622 195 ntBASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Vps54Q5SPW0 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps54Q5SPW0 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms