Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col1a1P11087 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col1a1P11087 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.89■□□□□ 0.77
Col1a1P11087 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.89■□□□□ 0.77
Col1a1P11087 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.88■□□□□ 0.77
Col1a1P11087 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC19.88■□□□□ 0.77
Col1a1P11087 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC19.88■□□□□ 0.77
Col1a1P11087 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.88■□□□□ 0.77
Col1a1P11087 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC19.88■□□□□ 0.77
Col1a1P11087 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.88■□□□□ 0.77
Col1a1P11087 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC19.88■□□□□ 0.77
Col1a1P11087 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.88■□□□□ 0.77
Col1a1P11087 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col1a1P11087 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Col1a1P11087 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Zfp264-201ENSMUST00000208656 1563 ntBASIC19.87■□□□□ 0.77
Col1a1P11087 Gm44430-201ENSMUST00000203376 995 ntBASIC19.87■□□□□ 0.77
Col1a1P11087 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Col1a1P11087 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Col1a1P11087 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col1a1P11087 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Col1a1P11087 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC19.86■□□□□ 0.77
Col1a1P11087 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col1a1P11087 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.86■□□□□ 0.77
Col1a1P11087 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.86■□□□□ 0.77
Col1a1P11087 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC19.86■□□□□ 0.77
Col1a1P11087 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC19.86■□□□□ 0.77
Col1a1P11087 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC19.86■□□□□ 0.77
Col1a1P11087 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Col1a1P11087 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col1a1P11087 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Col1a1P11087 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC19.86■□□□□ 0.77
Col1a1P11087 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Col1a1P11087 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col1a1P11087 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col1a1P11087 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC19.85■□□□□ 0.77
Col1a1P11087 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.85■□□□□ 0.77
Col1a1P11087 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col1a1P11087 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.84■□□□□ 0.77
Col1a1P11087 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Col1a1P11087 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC19.84■□□□□ 0.77
Col1a1P11087 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col1a1P11087 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC19.84■□□□□ 0.77
Col1a1P11087 Gm18856-201ENSMUST00000178096 1374 ntBASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms