Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Clk4O35493 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Clk4O35493 Gm37055-201ENSMUST00000191866 133 ntBASIC16.33■□□□□ 0.2
Clk4O35493 Gm37025-201ENSMUST00000195159 829 ntBASIC16.33■□□□□ 0.2
Clk4O35493 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.33■□□□□ 0.2
Clk4O35493 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Clk4O35493 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Clk4O35493 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Clk4O35493 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.32■□□□□ 0.2
Clk4O35493 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Clk4O35493 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.32■□□□□ 0.2
Clk4O35493 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.32■□□□□ 0.2
Clk4O35493 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.32■□□□□ 0.2
Clk4O35493 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Clk4O35493 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Clk4O35493 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Clk4O35493 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.31■□□□□ 0.2
Clk4O35493 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.31■□□□□ 0.2
Clk4O35493 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.31■□□□□ 0.2
Clk4O35493 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.31■□□□□ 0.2
Clk4O35493 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC16.31■□□□□ 0.2
Clk4O35493 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Clk4O35493 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.31■□□□□ 0.2
Clk4O35493 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Clk4O35493 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.3■□□□□ 0.2
Clk4O35493 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.3■□□□□ 0.2
Clk4O35493 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Clk4O35493 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.3■□□□□ 0.2
Clk4O35493 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clk4O35493 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Clk4O35493 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Dancr-204ENSMUST00000132389 2347 ntBASIC16.29■□□□□ 0.2
Clk4O35493 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Clk4O35493 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.29■□□□□ 0.2
Clk4O35493 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Clk4O35493 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.29■□□□□ 0.2
Clk4O35493 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Clk4O35493 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clk4O35493 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clk4O35493 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clk4O35493 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clk4O35493 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Clk4O35493 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clk4O35493 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms