Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
HMGB1P09429 LYARP1-201ENST00000436977 1501 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC7.9□□□□□ -1.14
HMGB1P09429 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
HMGB1P09429 OR7A2P-201ENST00000304105 930 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 RNA5SP188-201ENST00000362916 129 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 RNU6-40P-201ENST00000384254 107 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
HMGB1P09429 MRPL32P1-201ENST00000406301 247 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 RN7SKP222-201ENST00000410651 315 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 RPS26P4-201ENST00000431743 355 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC7.9□□□□□ -1.14
HMGB1P09429 AC243772.1-201ENST00000451620 410 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 EIF3LP2-201ENST00000457262 807 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC7.9□□□□□ -1.14
HMGB1P09429 SNORA58-201ENST00000505219 137 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC7.9□□□□□ -1.14
HMGB1P09429 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.9□□□□□ -1.14
HMGB1P09429 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC7.9□□□□□ -1.14
HMGB1P09429 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 AL390198.2-201ENST00000510553 222 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 CFI-204ENST00000510800 667 ntTSL 2 BASIC7.9□□□□□ -1.14
HMGB1P09429 AC093878.1-201ENST00000515630 432 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 AC020937.1-201ENST00000519677 1013 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC7.9□□□□□ -1.14
HMGB1P09429 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC7.9□□□□□ -1.14
HMGB1P09429 SNRPGP1-201ENST00000553864 222 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 MIR378H-201ENST00000579966 83 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
HMGB1P09429 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC7.9□□□□□ -1.14
HMGB1P09429 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
HMGB1P09429 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 SNX18P10-201ENST00000625014 519 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.9□□□□□ -1.14
HMGB1P09429 AC119674.1-212ENST00000641155 993 ntBASIC7.9□□□□□ -1.14
HMGB1P09429 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
HMGB1P09429 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC7.9□□□□□ -1.15
HMGB1P09429 AC005618.1-201ENST00000606901 3148 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 AP002370.1-201ENST00000528055 1602 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 SAMMSON-213ENST00000641336 1521 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC7.89□□□□□ -1.15
HMGB1P09429 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 AC107977.1-201ENST00000355745 939 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 RNA5SP321-201ENST00000362722 111 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 RNA5SP333-201ENST00000363466 118 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 RNA5SP334-201ENST00000364825 118 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 RNU6-244P-201ENST00000391028 104 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
HMGB1P09429 RPL18AP14-201ENST00000417685 526 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 RPL36P18-201ENST00000419316 318 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 AC000089.1-201ENST00000424559 801 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AHCYP8-201ENST00000425108 209 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC7.89□□□□□ -1.15
HMGB1P09429 RPL3P11-201ENST00000434028 1146 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AC002553.2-201ENST00000453217 340 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AC068522.1-201ENST00000482895 345 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC7.89□□□□□ -1.15
HMGB1P09429 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC7.89□□□□□ -1.15
HMGB1P09429 AC096661.1-201ENST00000515870 822 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 IGLV3-6-201ENST00000523937 250 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC7.89□□□□□ -1.15
HMGB1P09429 AP004607.5-201ENST00000532034 217 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AC007068.2-201ENST00000543168 395 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC7.89□□□□□ -1.15
HMGB1P09429 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 AP003115.1-201ENST00000569849 463 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 MIR4312-201ENST00000579909 76 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC7.89□□□□□ -1.15
HMGB1P09429 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC7.89□□□□□ -1.15
HMGB1P09429 HNRNPA3P9-201ENST00000604913 979 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 AC005858.3-201ENST00000624756 589 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 TEX41-255ENST00000626404 610 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 PABPC1P8-201ENST00000452851 2086 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 AL139384.2-201ENST00000613809 3590 ntBASIC7.89□□□□□ -1.15
HMGB1P09429 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
HMGB1P09429 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
HMGB1P09429 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HMGB1P09429 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms