Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 AC107977.1-201ENST00000355745 939 ntBASIC5.94□□□□□ -1.46
SOX3P41225 SNORD8-201ENST00000363915 110 ntBASIC5.94□□□□□ -1.46
SOX3P41225 RN7SKP237-201ENST00000364663 301 ntBASIC5.94□□□□□ -1.46
SOX3P41225 SNORA70.9-201ENST00000384370 135 ntBASIC5.94□□□□□ -1.46
SOX3P41225 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 RNU2-18P-201ENST00000411224 162 ntBASIC5.94□□□□□ -1.46
SOX3P41225 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 OSTCP4-201ENST00000424397 449 ntBASIC5.94□□□□□ -1.46
SOX3P41225 VN1R20P-201ENST00000425215 966 ntBASIC5.94□□□□□ -1.46
SOX3P41225 MED28P4-201ENST00000433137 572 ntBASIC5.94□□□□□ -1.46
SOX3P41225 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.94□□□□□ -1.46
SOX3P41225 GTF2IP14-201ENST00000441415 586 ntBASIC5.94□□□□□ -1.46
SOX3P41225 TIMM8BP2-201ENST00000445940 251 ntBASIC5.94□□□□□ -1.46
SOX3P41225 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 AL359839.1-201ENST00000451975 1160 ntBASIC5.94□□□□□ -1.46
SOX3P41225 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 AC019084.1-201ENST00000457337 432 ntBASIC5.94□□□□□ -1.46
SOX3P41225 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.94□□□□□ -1.46
SOX3P41225 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.94□□□□□ -1.46
SOX3P41225 MTCO3P42-201ENST00000509488 518 ntBASIC5.94□□□□□ -1.46
SOX3P41225 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.94□□□□□ -1.46
SOX3P41225 MTCO3P39-201ENST00000514812 518 ntBASIC5.94□□□□□ -1.46
SOX3P41225 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 CYCSP25-201ENST00000525280 316 ntBASIC5.94□□□□□ -1.46
SOX3P41225 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.94□□□□□ -1.46
SOX3P41225 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
SOX3P41225 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
SOX3P41225 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.94□□□□□ -1.46
SOX3P41225 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SOX3P41225 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.93□□□□□ -1.46
SOX3P41225 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
SOX3P41225 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 RN7SKP86-201ENST00000410454 332 ntBASIC5.93□□□□□ -1.46
SOX3P41225 AC017035.1-201ENST00000411999 1115 ntBASIC5.93□□□□□ -1.46
SOX3P41225 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.93□□□□□ -1.46
SOX3P41225 RPL21P50-201ENST00000417698 477 ntBASIC5.93□□□□□ -1.46
SOX3P41225 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.93□□□□□ -1.46
SOX3P41225 OR7E22P-201ENST00000478335 1035 ntBASIC5.93□□□□□ -1.46
SOX3P41225 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 AC113367.2-201ENST00000505749 160 ntBASIC5.93□□□□□ -1.46
SOX3P41225 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC5.93□□□□□ -1.46
SOX3P41225 AC024405.1-201ENST00000532521 1042 ntBASIC5.93□□□□□ -1.46
SOX3P41225 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.93□□□□□ -1.46
SOX3P41225 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.93□□□□□ -1.46
SOX3P41225 AC073046.2-201ENST00000604756 527 ntBASIC5.93□□□□□ -1.46
SOX3P41225 AL161912.3-201ENST00000605404 628 ntBASIC5.93□□□□□ -1.46
SOX3P41225 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.93□□□□□ -1.46
SOX3P41225 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.93□□□□□ -1.46
SOX3P41225 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 AL121936.2-201ENST00000641935 662 ntBASIC5.93□□□□□ -1.46
SOX3P41225 LINC01616-201ENST00000561816 2280 ntBASIC5.93□□□□□ -1.46
SOX3P41225 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
SOX3P41225 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
SOX3P41225 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.93□□□□□ -1.46
SOX3P41225 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.93□□□□□ -1.46
SOX3P41225 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SOX3P41225 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.93□□□□□ -1.46
SOX3P41225 AC011815.2-201ENST00000618230 2021 ntBASIC5.92□□□□□ -1.46
SOX3P41225 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SOX3P41225 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 AL353743.3-201ENST00000442109 1468 ntBASIC5.92□□□□□ -1.46
SOX3P41225 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
SOX3P41225 LCN1P2-201ENST00000372030 223 ntBASIC5.92□□□□□ -1.46
SOX3P41225 AL360271.1-201ENST00000395679 510 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms