Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc9Q8VC31 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 AC093043.3-201ENSMUST00000226531 2273 ntBASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
Ccdc9Q8VC31 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Ccdc9Q8VC31 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc9Q8VC31 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Spcs1-204ENSMUST00000226782 949 ntBASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc9Q8VC31 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc9Q8VC31 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Gm44616-201ENSMUST00000206417 1732 ntBASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc9Q8VC31 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms