Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rpp40Q8R1F9 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Actl10-202ENSMUST00000226583 1501 ntBASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Rpp40Q8R1F9 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Gm6659-201ENSMUST00000174752 547 ntBASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rpp40Q8R1F9 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.25■□□□□ 0.51
Rpp40Q8R1F9 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Gm21559-201ENSMUST00000220638 855 ntBASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Gm8587-201ENSMUST00000076538 843 ntBASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rpp40Q8R1F9 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpp40Q8R1F9 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms