Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Brf1Q8CFK2 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Brf1Q8CFK2 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Brf1Q8CFK2 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Brf1Q8CFK2 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Brf1Q8CFK2 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Brf1Q8CFK2 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Brf1Q8CFK2 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Brf1Q8CFK2 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Brf1Q8CFK2 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Gm13559-201ENSMUST00000120476 863 ntBASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Gm27000-201ENSMUST00000182943 842 ntBASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Brf1Q8CFK2 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Gm43799-201ENSMUST00000201845 579 ntBASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Brf1Q8CFK2 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms