Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.62
Trim47Q8C0E3 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Gm23634-201ENSMUST00000175071 91 ntBASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Actl10-202ENSMUST00000226583 1501 ntBASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Trim47Q8C0E3 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim47Q8C0E3 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim47Q8C0E3 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim47Q8C0E3 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Gm27389-201ENSMUST00000183622 195 ntBASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.85■□□□□ 0.61
Trim47Q8C0E3 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim47Q8C0E3 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim47Q8C0E3 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim47Q8C0E3 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim47Q8C0E3 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms