Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Gm18115-201ENSMUST00000221209 621 ntBASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
Usp40Q8BWR4 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Usp40Q8BWR4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
Usp40Q8BWR4 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC23.39■■□□□ 1.34
Usp40Q8BWR4 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Usp40Q8BWR4 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Usp40Q8BWR4 Gm44450-201ENSMUST00000199528 114 ntBASIC23.39■■□□□ 1.33
Usp40Q8BWR4 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Usp40Q8BWR4 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Usp40Q8BWR4 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Usp40Q8BWR4 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Usp40Q8BWR4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Usp40Q8BWR4 Tfap2a-209ENSMUST00000225180 1828 ntBASIC23.38■■□□□ 1.33
Usp40Q8BWR4 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Usp40Q8BWR4 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Usp40Q8BWR4 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Gm7153-201ENSMUST00000117092 455 ntBASIC23.36■■□□□ 1.33
Usp40Q8BWR4 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Gm8969-201ENSMUST00000199694 526 ntBASIC23.36■■□□□ 1.33
Usp40Q8BWR4 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Usp40Q8BWR4 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Usp40Q8BWR4 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC23.34■■□□□ 1.33
Usp40Q8BWR4 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Usp40Q8BWR4 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Usp40Q8BWR4 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Usp40Q8BWR4 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms