Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20.1■□□□□ 0.81
Trim56Q80VI1 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim56Q80VI1 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Gm6659-201ENSMUST00000174752 547 ntBASIC20.09■□□□□ 0.81
Trim56Q80VI1 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim56Q80VI1 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Trim56Q80VI1 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Gm10013-201ENSMUST00000106074 672 ntBASIC20.08■□□□□ 0.81
Trim56Q80VI1 Gm18101-201ENSMUST00000215769 548 ntBASIC20.08■□□□□ 0.81
Trim56Q80VI1 Gm21559-201ENSMUST00000220638 855 ntBASIC20.08■□□□□ 0.81
Trim56Q80VI1 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Gm8587-201ENSMUST00000076538 843 ntBASIC20.08■□□□□ 0.81
Trim56Q80VI1 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.08■□□□□ 0.81
Trim56Q80VI1 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trim56Q80VI1 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.07■□□□□ 0.8
Trim56Q80VI1 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim56Q80VI1 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Trim56Q80VI1 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms