Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Limch1Q3UH68 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.08■□□□□ 0.8
Limch1Q3UH68 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Limch1Q3UH68 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Limch1Q3UH68 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Limch1Q3UH68 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Limch1Q3UH68 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Limch1Q3UH68 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Shroom3-211ENSMUST00000225438 5742 ntBASIC20.07■□□□□ 0.8
Limch1Q3UH68 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Limch1Q3UH68 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.07■□□□□ 0.8
Limch1Q3UH68 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Gm7889-201ENSMUST00000185591 958 ntBASIC20.06■□□□□ 0.8
Limch1Q3UH68 Gm10517-202ENSMUST00000192970 758 ntBASIC20.06■□□□□ 0.8
Limch1Q3UH68 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC20.06■□□□□ 0.8
Limch1Q3UH68 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Limch1Q3UH68 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC20.05■□□□□ 0.8
Limch1Q3UH68 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Limch1Q3UH68 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Limch1Q3UH68 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms