Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col28a1Q2UY11 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Gm8839-201ENSMUST00000121279 1645 ntBASIC16.56■□□□□ 0.24
Col28a1Q2UY11 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col28a1Q2UY11 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Gm12896-201ENSMUST00000118430 226 ntBASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Gm7977-201ENSMUST00000193787 748 ntBASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col28a1Q2UY11 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Dancr-204ENSMUST00000132389 2347 ntBASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Gm38285-201ENSMUST00000192928 922 ntBASIC16.53■□□□□ 0.24
Col28a1Q2UY11 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms