Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC14.07□□□□□ -0.16
Sdc1P18828 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC14.07□□□□□ -0.16
Sdc1P18828 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC14.06□□□□□ -0.16
Sdc1P18828 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC14.06□□□□□ -0.16
Sdc1P18828 Gm9207-201ENSMUST00000198773 1115 ntBASIC14.06□□□□□ -0.16
Sdc1P18828 Gm15820-201ENSMUST00000201566 728 ntBASIC14.06□□□□□ -0.16
Sdc1P18828 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
Sdc1P18828 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sdc1P18828 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Sdc1P18828 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Sdc1P18828 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC14.05□□□□□ -0.16
Sdc1P18828 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Sdc1P18828 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sdc1P18828 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Sdc1P18828 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Sdc1P18828 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC14.04□□□□□ -0.16
Sdc1P18828 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Sdc1P18828 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Golgb1-201ENSMUST00000023534 498 ntBASIC14.04□□□□□ -0.16
Sdc1P18828 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sdc1P18828 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Sdc1P18828 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Sdc1P18828 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Gm45212-201ENSMUST00000205831 3403 ntBASIC14.03□□□□□ -0.16
Sdc1P18828 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Sdc1P18828 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Sdc1P18828 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC14.03□□□□□ -0.16
Sdc1P18828 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Sdc1P18828 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.03□□□□□ -0.16
Sdc1P18828 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sdc1P18828 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms