Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Prpf40aQ9R1C7 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Gm715-201ENSMUST00000117865 831 ntBASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prpf40aQ9R1C7 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Prpf40aQ9R1C7 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Prpf40aQ9R1C7 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Prpf40aQ9R1C7 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Prpf40aQ9R1C7 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms